PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27898.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 510aa MW: 56739.1 Da PI: 9.5597

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	69	89	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H PHT27898.1 69 CEVCNKGFQREQNLQLHRRGH 89 *******************88 PP
2	zf-C2H2	13.4	0.00023	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ PHT27898.1 144 FKCEKCSKKYAVQSDWKAHSKTC 166 89*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MAGGSSSTMF FAMRQEEELI QNHQEMLHQS HAHEAPTKKR RNQPGTPSKY LSMIALSPKT 60 LMATNRFLCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNT KEVAKRKVYL CPEPTCIHHE 120 PSRALGDLTG IKKHYFRKHG EKKFKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALVQETT KTFIPPTTTF NTLGMNNNQF LYGSSSNINL GNFSKLSNNN 240 ITKTTTSTTT SAHRFGHHDN NLIGSSSNTN SFFHDQDYAN NIKPMVHGLM QLPNLDQNND 300 HTTNMFNLNF FQNNSTNNLS TSGLLGDHHH NNNISCSIPS LYGTQIFESS GAISSAGPTM 360 SATALLQKAA QMGSSTTSNI STTASLLKAF GSTSGGSSSS GTKSDHQALN FGNEITDGVI 420 NAYEAGGSHE GYNNTTTKLN FEQQHQGPPQ KKQLTRDFLG VGEMVRSMSG RFGTQREQQQ 480 QNDGLNMMSS LLDSERNQIQ QSFGSGPNFQ

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MAGGSSSTMF FAMRQEEELI QNHQEMLHQS HAHEAPTKKR RNQPGTPSKY LSMIALSPKT  60
LMATNRFLCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNT KEVAKRKVYL CPEPTCIHHE  120
PSRALGDLTG IKKHYFRKHG EKKFKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALVQETT KTFIPPTTTF NTLGMNNNQF LYGSSSNINL GNFSKLSNNN  240
ITKTTTSTTT SAHRFGHHDN NLIGSSSNTN SFFHDQDYAN NIKPMVHGLM QLPNLDQNND  300
HTTNMFNLNF FQNNSTNNLS TSGLLGDHHH NNNISCSIPS LYGTQIFESS GAISSAGPTM  360
SATALLQKAA QMGSSTTSNI STTASLLKAF GSTSGGSSSS GTKSDHQALN FGNEITDGVI  420
NAYEAGGSHE GYNNTTTKLN FEQQHQGPPQ KKQLTRDFLG VGEMVRSMSG RFGTQREQQQ  480
QNDGLNMMSS LLDSERNQIQ QSFGSGPNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	3e-98	C2H2 family protein