PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT27207.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 18904.9 Da    PI: 9.9515
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT27207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.93.2e-242577151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS..EEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg..klyeyss 51
                k+i++k  rqvtf+kRr+g++KKA+ELS+LCd++v v+i+s++g  +l+e+s+
  PHT27207.1 25 KKIQDKNCRQVTFCKRRKGLMKKANELSILCDVDVGVVIISNNGagRLHEFSN 77
                689***************************************85338***985 PP
2K-box19.83.2e-081101522769
       K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                   e Lq++ R++   + +   + +L +Le++L+++l +iRs+K
  PHT27207.1 110 IGELLQTTERQFEETNADGFAVTDLVHLENELQTALIQIRSTK 152
                 45789999999999999************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
METCGNIGLG FKKKKKMGRR KLEIKKIQDK NCRQVTFCKR RKGLMKKANE LSILCDVDVG  60
VVIISNNGAG RLHEFSNTNS VTGILQRYKS HIKEEKEISG EHSKYSSMKI GELLQTTERQ  120
FEETNADGFA VTDLVHLENE LQTALIQIRS TKVFLQSSVP CPIGIASF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.17e-25MIKC_MADS family protein