PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT26905.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 163aa    MW: 18031.8 Da    PI: 10.7236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT26905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT++E+  l+ +v+++G+g W+tI +          R+  ++k++w++
       PHT26905.1  5 KQKWTPDEEAALKAGVHKYGPGKWRTILKDPEfskvlSSRSNVDLKDKWRN 55
                     79***********************************9************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MGAPKQKWTP DEEAALKAGV HKYGPGKWRT ILKDPEFSKV LSSRSNVDLK DKWRNMSVIA  60
NGWGSREKAR LALKRMNQAR KQDESSLAVI TEAKSDEKMA EARLATTSIG SPQIGGSKRS  120
IIRLDNLIME AISNLKESGG SNKASIATYI EVLIFLLSLM SKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-61MYB_related family protein