PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT25629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15857.2 Da PI: 9.9799 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.2 | 2.4e-14 | 21 | 70 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 k+i n+ r+vtfsk r ++K A+EL++L +ae+ ++i s + ++l+++ PHT25629.1 21 KPIYNQNSRHVTFSKHRLDLFKRASELCILAGAEIVILIQSLKpQTLFTF 70 6899***********************************99543677777 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence |
MNVNTNTTVK KTQGRRKIAI KPIYNQNSRH VTFSKHRLDL FKRASELCIL AGAEIVILIQ 60 SLKPQTLFTF GHPNADVVID CYLTGKYSSS LSSSSTDKFN LQKNNQYYSQ MCKDLKAEKK 120 KENYEDVKMV NIDNNLYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-18 | M-type_MADS family protein |