PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT24876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 19541.7 Da PI: 9.9607 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.7 | 7e-09 | 7 | 47 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri + ++++v + kR++ + KKA+ L +LCd+++ + f + PHT24876.1 7 RIVDPRKKKVLLDKRLESLYKKAKQLEILCDIKIGMFFFTP 47 778889999*************************9888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MGVRPSRIVD PRKKKVLLDK RLESLYKKAK QLEILCDIKI GMFFFTPGDQ NIFAWPSLTH 60 ATDRVKNYLD FFDKQRPIKM VKHEDFLQSV LNAKEGKINQ LEKIVEKKEM EYNFNQLVEA 120 RKRFDELEVR EIKALINLFA VKRAQLDERA KQLNENVETK IDSND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 2e-15 | M-type_MADS family protein |