PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127682.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 230aa MW: 25980.6 Da PI: 9.1803

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.1	2.2e-33	25	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+e++ e+L++kv+++ ++++ + ++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + XP_027127682.1 25 LPAGVKFDPSDQEIL-EHLEAKVRSDVhklhplIDEFIHtLEGEnGICCTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdidgcET 117 799*********9.99**9995554332222222443336******.555666688**************75545766678 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v + kg+++g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_027127682.1 118 RWHKTGKTRPVAV-KGKVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 165 8********.999*******66589************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MMACPSCGLT LQSPEKAGIH DLPGLPAGVK FDPSDQEILE HLEAKVRSDV HKLHPLIDEF 60 IHTLEGENGI CCTHPEKLPG VSKDGLVRHF FHRPSKAYTT GTRKRRKVHT DIDGCETRWH 120 KTGKTRPVAV KGKVKGFKKI LVLYTNYGRQ RKPEKTNWVM HQYHLGNNED EKEGELVVSK 180 VFYQTQPRQC GSLIKDSPVK GNGRIGHEGS HLNNSTFVEY YNSALISFDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	133	RKRRKVHTDIDGCETRWHKTGKTRPVAVKGK
2	104	134	RKRRKVHTDIDGCETRWHKTGKTRPVAVKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-110	NAC family protein