PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127437.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 476aa MW: 52023.5 Da PI: 6.9686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	367	405	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_027127437.1 367 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 405 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MADEFQVGSG SWWDSSTSSR TRFDRGSTAA ASTSVNSSIN MGSFGWPTEI VAARSSMDSS 60 VSMSGGSMLF PPAVDHSSQK LQAHESSSAG GSGEGSMLPD PNLQIMGLAL SSQAMDWNQA 120 ALFRGEKAQS SFRSMLQEDA STNFQQESGV TSSQDHQWRH KLYAGSPDDS SVITEFKPMN 180 QRGLSLDQPQ FSSNMSSSNS TITCQGLSPN FQVESASYAA SPNSILQGLL VPDHHHQQQQ 240 QSMNYSYPTS YGMESTSNQL MPSNSWSKFP QFLRNSPPKQ QPPHGQLHFS NNTPFWNASS 300 TGMSDVRSSL FPPLQTQLPM PNFEEKSKNA SEVRDLPVAK KSSSSSSAPS NKRPRNETPA 360 PMPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHDQVN VLSTPYMKSG 420 APMQHQQNPD KSKDPEGPKQ DLRSRGLCLV PVSSTFPVTH ETAVDYWTPT FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MADEFQVGSG SWWDSSTSSR TRFDRGSTAA ASTSVNSSIN MGSFGWPTEI VAARSSMDSS  60
VSMSGGSMLF PPAVDHSSQK LQAHESSSAG GSGEGSMLPD PNLQIMGLAL SSQAMDWNQA  120
ALFRGEKAQS SFRSMLQEDA STNFQQESGV TSSQDHQWRH KLYAGSPDDS SVITEFKPMN  180
QRGLSLDQPQ FSSNMSSSNS TITCQGLSPN FQVESASYAA SPNSILQGLL VPDHHHQQQQ  240
QSMNYSYPTS YGMESTSNQL MPSNSWSKFP QFLRNSPPKQ QPPHGQLHFS NNTPFWNASS  300
TGMSDVRSSL FPPLQTQLPM PNFEEKSKNA SEVRDLPVAK KSSSSSSAPS NKRPRNETPA  360
PMPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHDQVN VLSTPYMKSG  420
APMQHQQNPD KSKDPEGPKQ DLRSRGLCLV PVSSTFPVTH ETAVDYWTPT FGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-73	bHLH family protein