PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027127423.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 308aa    MW: 33097.9 Da    PI: 10.0749
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027127423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK67.42.1e-213178249
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49
                    +k+++++++sk+Fslp+ dAA +Lgvc++vLK+iC ++G+ RWPhRk 
  XP_027127423.1 31 TKSLTFDQVSKFFSLPLSDAADTLGVCPSVLKKICHENGLVRWPHRKF 78
                    799********************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MSALQSRPPN PTLNPYPNPN PNPKAAPLPN TKSLTFDQVS KFFSLPLSDA ADTLGVCPSV  60
LKKICHENGL VRWPHRKFLS GKSIEQIKED AARAKNKQLN EVPKDAGQGS DALANSTVSL  120
LAGTGTQLQN KTTSSVAEVS KAPSVMQLQG NKNPQIGSPP KLTGLNLTRG TSTNEDEFKY  180
GFPSHGLSTV SYKWWGNSSN SGSKDTPGTA KDETQGNRKS PVNSANGITL GSRTDGQKCE  240
NEARESSTDS PGEGVLSSLR KRAATEGHKA LKLGAHRRYV MELDQTKRSV LQQIFKSSLP  300
SEWGDDSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.22e-10Nin-like family protein