PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027127404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | TCP | ||||||||
Protein Properties | Length: 345aa MW: 38352.3 Da PI: 7.3456 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.1 | 4.5e-36 | 25 | 124 | 1 | 90 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa...sece 74 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + + s XP_027127404.1 25 ATGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELphnhpneislmaapstdsN---PgsaS--- 113 589**************************************************************5555555554444432221...01112... PP TCP 75 aesssssasnsssg........ka 90 g ++ XP_027127404.1 114 -------------GcqgfeqrsES 124 .............12222221111 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence |
MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ 60 DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SASGCQGFEQ 120 RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD 180 RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMFPGTNYQ QKTESWSGAG 240 EGENRNIGFI FNPHSMPVPQ QLIFSQNSAF SQREPLQSNY SHLFHAWNER QMPSVDHHNA 300 QAISQSSMYN IHFGSDFQVP ARIRGDEEPG VVSLQPSSVS PSSQH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 5e-55 | TCP family protein |