PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027127258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 470aa MW: 51359.7 Da PI: 8.8863 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 55 | 75 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_027127258.1 55 CEICGKGFQRDQNLQLHRRGH 75 *******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 129 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_027127258.1 129 WKCEKCSKRYAVQSDWKAHSKTC 151 58*****************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence |
MTEEVISSGF IQTPIGEANP PPLKKKRNLP GTPDPEAEVI ALSPKTLMAT NRFLCEICGK 60 GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEKS CVHHHPSRAL GDLTGIKKHF 120 CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAL 180 AEETARVTAA SNVVAANSIN YHFVGASLGP GMGQHFASMF KPISTNNETP ANPIRQGLSL 240 WMGAHGLSQT QESIGNNNLQ EIHHQLNPAV SSSGLVFTTD PFVSVPCSNP PPINYPLNWD 300 FGNKPSSNSS EELTNNSSSL PLSNVAKDGG SQVISVPSLF STQHQSHQTH STANMSATAL 360 LQKAAQMGAT TTDPSFLGSF GLKCNDSQIQ DGNRYCSPYG GTATSVATAL QSSVTDHLST 420 LNELQMYPSK RRHIQVDQDS TPTTGGGQTR DFLGVGIQSI CHPSSINGWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-141 | C2H2 family protein |