PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127048.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 443aa MW: 49806.2 Da PI: 5.2004

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.9	1.8e-34	15	105	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye++ed+ +++++sws++g sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++ weF ++ F +g+++ll++ XP_027127048.1 15 FLTKTYEMVEDPMTNSIVSWSHSGMSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKSDPDQ---------WEFLNEDFIRGQRHLLRN 100 9************************************************************99988.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i r+k XP_027127048.1 101 IYRRK 105 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MMDGSNGGST APAPFLTKTY EMVEDPMTNS IVSWSHSGMS FIVWNPPEFA RDLLPKYFKH 60 NNFSSFIRQL NTYGFRKSDP DQWEFLNEDF IRGQRHLLRN IYRRKPIHSH SVQGNSAVPL 120 GNAERQSFQE EIERLNGEKN LLQSELERHK QESREFETEV NSLAERLRNI DNRQRQLMAC 180 LAQLLQKPGF ASGLMQQSEN HNKRRRLLIS NYLYDEANIG QSPVVSFQPE NPNLCLPVLN 240 TELIEKLDAS VNFWETFLYG MCSSSAEEMY GFACLPHPPP LTITGPLASS GDSDVNVQPC 300 SSNSLRSSPS GEFHSSPELV VSSNHVDSPA TSSPCLDMDS RSKSSGIDVN TSPATIMEIE 360 TSKDQVGSVS ASAPAGTNDV FWQQFLTETP GSSDTQEVQS ERREIAARTS DSRLADHHRT 420 WWNKNNVENL TEQMGHLTPA EKT

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MMDGSNGGST APAPFLTKTY EMVEDPMTNS IVSWSHSGMS FIVWNPPEFA RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKSDP DQWEFLNEDF IRGQRHLLRN IYRRKPIHSH SVQGNSAVPL  120
GNAERQSFQE EIERLNGEKN LLQSELERHK QESREFETEV NSLAERLRNI DNRQRQLMAC  180
LAQLLQKPGF ASGLMQQSEN HNKRRRLLIS NYLYDEANIG QSPVVSFQPE NPNLCLPVLN  240
TELIEKLDAS VNFWETFLYG MCSSSAEEMY GFACLPHPPP LTITGPLASS GDSDVNVQPC  300
SSNSLRSSPS GEFHSSPELV VSSNHVDSPA TSSPCLDMDS RSKSSGIDVN TSPATIMEIE  360
TSKDQVGSVS ASAPAGTNDV FWQQFLTETP GSSDTQEVQS ERREIAARTS DSRLADHHRT  420
WWNKNNVENL TEQMGHLTPA EKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	207	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	1e-95	HSF family protein