PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126993.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 397aa    MW: 44590.9 Da    PI: 7.8463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08142162526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f+r G C++Gd+C +aHg
  XP_027126993.1 142 VCSEFRR-GNCSRGDNCEYAHG 162
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MSLSTFSSSS DMTSVFADQQ QQHKFHQLSY LNKKSPREIE IPPRKLLSRR AAASGAMHLD  60
SGDMFMDSPK AEEALLQKFL PYNNIDDDDA DPYSSDHFRM YEFKVRKCTR SRSHDWTDCP  120
FAHPGEKARR RDPRRYHYSG TVCSEFRRGN CSRGDNCEYA HGVFECWLHP SRYRTEACKD  180
GKNCKRKVCF FAHSPRQLRV LPANCHETAS SPVNSPVEKQ QQHHRNVNHC CMYCHSVAAS  240
PTSTLMGMSH LSPPLSPPLS PPISPAKAAQ FSPVSRYKDH FASVEPCGMA QFSSGGMGGL  300
SYKDALTELM SSIEAMRVKE SSSHAAASNN GISLPWLDVN FNGDDQQQFI LSPSTPSPGT  360
SNFLSRNFPS RNFIEENKYT ENGLAGPDLE WVNDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-86C3H family protein