PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126920.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 224aa    MW: 24386.6 Da    PI: 8.1055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.6e-11143190455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_027126920.1 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 190
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MDPPIVSHSS FSPAHASSSY TLTDLWPFPI GPPAVLGLPM PPALPIPHAT PPPVAALSLE  60
ESTVTDLSAC RTNATNKRKH NNANVKRMKA SEGGIGEQID ESKAEPQTSS YTTNKPADHD  120
DTNPQPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD  180
EIINYIQSLQ RQVEFLSMKL EAVNSRMNSA IEGFPSKGTC SSTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.14e-58bHLH family protein