PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126820.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 507aa MW: 56605.3 Da PI: 4.1457

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	272	319	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+e+++++v ++ W+ a +++ Rt k+++s+++++ XP_027126820.1 272 KWSEEEEEIFAEVVFSHPASlgrnFWNHSAIEFP-SRTKKEIVSYYFNV 319 8**************9999999******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MVQKRPLSEE LYEALSKQPK LLEPSDKRVS VLEFPDGNIP PKLHILGEDG AACDKKKGES 60 DESLVDSNLA EFQSYVEKEI DRSLACSISN SSWATSTTCE EDVRSGAPCI LLSPNHYNLD 120 FPARTIFHTG DIYSSLLEYP PRKLVPIGSG FQAEIPEWCG CDDEKLSSSS GDAFEVFNRS 180 SQSLMSDIGN HLDHERQFSG SCLVPMPRSD MSEDTGEKLG DGRIDCSCDD VGSVRCVRQH 240 ITEAREKLRK TLGQEAFVKL GFLEMGEVVA EKWSEEEEEI FAEVVFSHPA SLGRNFWNHS 300 AIEFPSRTKK EIVSYYFNVF MLRRRAEQNR IDVLSIDSDN DEWEGTNVSA DEVIEKINGY 360 DDSVVESPAE EDDHNEIFED NLCEYKDDIN AEEASEDNIR LNLDGSKCVS KESDMPPIDM 420 PDNCSSDQAH QPLDQVLSDI SGNQNTKHIT SNLSSMSSST GNELFLEPCS SKEWDVGCLT 480 CPKDEDFLPT SSVIEEVFGA GAWNSRD

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MVQKRPLSEE LYEALSKQPK LLEPSDKRVS VLEFPDGNIP PKLHILGEDG AACDKKKGES  60
DESLVDSNLA EFQSYVEKEI DRSLACSISN SSWATSTTCE EDVRSGAPCI LLSPNHYNLD  120
FPARTIFHTG DIYSSLLEYP PRKLVPIGSG FQAEIPEWCG CDDEKLSSSS GDAFEVFNRS  180
SQSLMSDIGN HLDHERQFSG SCLVPMPRSD MSEDTGEKLG DGRIDCSCDD VGSVRCVRQH  240
ITEAREKLRK TLGQEAFVKL GFLEMGEVVA EKWSEEEEEI FAEVVFSHPA SLGRNFWNHS  300
AIEFPSRTKK EIVSYYFNVF MLRRRAEQNR IDVLSIDSDN DEWEGTNVSA DEVIEKINGY  360
DDSVVESPAE EDDHNEIFED NLCEYKDDIN AEEASEDNIR LNLDGSKCVS KESDMPPIDM  420
PDNCSSDQAH QPLDQVLSDI SGNQNTKHIT SNLSSMSSST GNELFLEPCS SKEWDVGCLT  480
CPKDEDFLPT SSVIEEVFGA GAWNSRD