PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126812.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 449aa MW: 49433 Da PI: 6.4156

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.2e-08	359	399	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_027126812.1 359 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 399 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MDGFNWDGAE VPENKSASWE NPQESLMVPN SSGYAFLGGK VDIPEDIFNT IQLLQRTGSP 60 NFKTCRGSQS FQHSAPAFNP PIQVLSSWNF SLQQEATKLA GDDEVPRKSS VAEISSPIPN 120 RTDFINQLNG LFFDYDTSNK SIINTCLQEA KAGLIATATG STESLDCLLS GSNSNTDTTS 180 VEDDADISMI FSDCKTLWNF RAVNGVSSGE SACDSSNAKD SNNHNRIKEL DETASKTTSS 240 GQHASQLPRH ATKRSSETLL QNLVRSDSSN SFQLISENEP KPKKPRSEKR PTSSNISFQQ 300 PSSSITSAGG EPDSEAIAQM KEMIYRAAAF RPVNFGMEVM EKPKRKNVRI STDPQTVAAR 360 QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALEALG QKNEESLLNY 420 PSIPFNHSFP VVTSNFLLHN PNIVNHPKI

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MDGFNWDGAE VPENKSASWE NPQESLMVPN SSGYAFLGGK VDIPEDIFNT IQLLQRTGSP  60
NFKTCRGSQS FQHSAPAFNP PIQVLSSWNF SLQQEATKLA GDDEVPRKSS VAEISSPIPN  120
RTDFINQLNG LFFDYDTSNK SIINTCLQEA KAGLIATATG STESLDCLLS GSNSNTDTTS  180
VEDDADISMI FSDCKTLWNF RAVNGVSSGE SACDSSNAKD SNNHNRIKEL DETASKTTSS  240
GQHASQLPRH ATKRSSETLL QNLVRSDSSN SFQLISENEP KPKKPRSEKR PTSSNISFQQ  300
PSSSITSAGG EPDSEAIAQM KEMIYRAAAF RPVNFGMEVM EKPKRKNVRI STDPQTVAAR  360
QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALEALG QKNEESLLNY  420
PSIPFNHSFP VVTSNFLLHN PNIVNHPKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	365	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-55	bHLH family protein