PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126742.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 394aa MW: 43582.7 Da PI: 9.173

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	344	366	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F+ + L H++ H XP_027126742.1 344 YNCEFCSKKFTKSQALGGHQNAH 366 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MKKGTKRKQP LNSSSSSSIT KSLKRSKTIG IGNTEPYPDH PRPTPDECLA LRDALLALHG 60 FPKEFLKYRE QRLKKENPSF EKNSLKPEPP EKLHVEEKSD SSGKSEGEES VLDGLVSTIL 120 SQNTTDVNSQ RAFLSLKSAF PTWEDVLAAE PNHIEDAIRC GGLAPTKASC IKSILNCLFE 180 KRGKLCLEYL RDLSIGEVKA ELSQFKGIGP KTVACVLMFH LQQNDFPVDT HARIKNMDQN 240 IAISFLLSPA RSCVDYFSCD TSVDNKRLKL FGFEIDSCQK STTAPISERD ERVSSSDTVL 300 SKGGKNLPGK GCISVDSSKV VHSRTDDLPK ATGNPLCSIE LQKYNCEFCS KKFTKSQALG 360 GHQNAHRKER LMKKGIQLQA KRTGSNAKIL SFSD

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MKKGTKRKQP LNSSSSSSIT KSLKRSKTIG IGNTEPYPDH PRPTPDECLA LRDALLALHG  60
FPKEFLKYRE QRLKKENPSF EKNSLKPEPP EKLHVEEKSD SSGKSEGEES VLDGLVSTIL  120
SQNTTDVNSQ RAFLSLKSAF PTWEDVLAAE PNHIEDAIRC GGLAPTKASC IKSILNCLFE  180
KRGKLCLEYL RDLSIGEVKA ELSQFKGIGP KTVACVLMFH LQQNDFPVDT HARIKNMDQN  240
IAISFLLSPA RSCVDYFSCD TSVDNKRLKL FGFEIDSCQK STTAPISERD ERVSSSDTVL  300
SKGGKNLPGK GCISVDSSKV VHSRTDDLPK ATGNPLCSIE LQKYNCEFCS KKFTKSQALG  360
GHQNAHRKER LMKKGIQLQA KRTGSNAKIL SFSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	9	KKGTKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	2e-10	C2H2 family protein