PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126645.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 314aa    MW: 33704.9 Da    PI: 6.6548
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-16229264134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_027126645.1 229 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKG 264
                     *****99999***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MEGGGGIHGG QAGTMHQQVH YLEEEDHHHH HHVLHHMGNG GHIMNHHGDE HEDTGSGAVV  60
GGSECMDADV STDQATLSDN HSALVPPGAS GSITNDNNQL TLSFQGQVYV FDSVSPEKVQ  120
AVLLLLGGRE VPLNVPTNPG ISSTPEKFNV PQRLASLIRF REKRKERNFD KKIRYTVRKE  180
VALRMQRNKG QFTSSKPSND DAASAASSWD SNQNWGLDAS ASQNQEISCR HCGISEKSTP  240
MMRRGPEGPR TLCNACGLMW ANKGALRDLS KGAGVQGPNS SLNQSDENGN FKADETGIRV  300
AGNGNGNGNG NDSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-95GATA family protein