PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126609.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 562aa MW: 61490.2 Da PI: 6.9636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.8	1.9e-18	261	310	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lre++P++ ++K +Ka+ L +++eYI+ Lq XP_027126609.1 261 RSKHSATEQRRRSKINDRFQKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 310 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MELRQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGFLK TQDFLQPLEQ GCKNDAKEED 60 KVEINDLEKP PPAASPSNIE HLLPGGIGTY SITYFNQRFL KPEGNVYMMA QASSTNINDE 120 NSNCSSYAGG GFTLWDESAV KKGKTGKENN AGDRAVLKEA EANVGAGQWR ASAERPSQSS 180 SNHKLNAATF SSLSTSKPSL AQRNQSFVNM ITSAKSFQEE DDDDDDEEEF VIKKEPSSHP 240 KGNLSVKVDG KSTDQKPSTP RSKHSATEQR RRSKINDRFQ KLREIIPHSD QKRDKASFLL 300 EVIEYIQFLQ DKVQKYEGPY PGWNQELSKP MPWRNLRGPE DFINSTQVTN IGSNPLIHAA 360 KLNESKVTSS SALAINGQHL ESDVSSAAAF GEKDHQPDIT DKAASVPMAL RHGIFPFGGT 420 STASVPLSST PASDIDKTAS HPQHQFWPRG SCTADSNITD KLKDQELTIE SGTISISSIY 480 SRGLLSTLTQ ALQSSGIDLS QANISVQIDL GKRANGRVNS SASVIKDVDV PSCNQAMPRS 540 IVTRAGEDSP GQALKRLKTS RS

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MELRQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGFLK TQDFLQPLEQ GCKNDAKEED  60
KVEINDLEKP PPAASPSNIE HLLPGGIGTY SITYFNQRFL KPEGNVYMMA QASSTNINDE  120
NSNCSSYAGG GFTLWDESAV KKGKTGKENN AGDRAVLKEA EANVGAGQWR ASAERPSQSS  180
SNHKLNAATF SSLSTSKPSL AQRNQSFVNM ITSAKSFQEE DDDDDDEEEF VIKKEPSSHP  240
KGNLSVKVDG KSTDQKPSTP RSKHSATEQR RRSKINDRFQ KLREIIPHSD QKRDKASFLL  300
EVIEYIQFLQ DKVQKYEGPY PGWNQELSKP MPWRNLRGPE DFINSTQVTN IGSNPLIHAA  360
KLNESKVTSS SALAINGQHL ESDVSSAAAF GEKDHQPDIT DKAASVPMAL RHGIFPFGGT  420
STASVPLSST PASDIDKTAS HPQHQFWPRG SCTADSNITD KLKDQELTIE SGTISISSIY  480
SRGLLSTLTQ ALQSSGIDLS QANISVQIDL GKRANGRVNS SASVIKDVDV PSCNQAMPRS  540
IVTRAGEDSP GQALKRLKTS RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	5e-88	bHLH family protein