PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126564.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 323aa    MW: 34762.7 Da    PI: 8.0305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182142521255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_027126564.1 214 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 252
                     6678889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MMAGNPNWWS MNSMHPQSHQ HQQFPSTTTF HSPAPPPPPP PPLPPQYNLY GGSSSPLSAN  60
SLSDHHPNPD FPRSWRQLLL GGLANEQERF VGSPFQNKKL ENWEGQTLNP SLRVPVSDVK  120
QEVALSTSVL FGAAADEEFQ ASTRPSWSQV VQASSPTSCV TSLSSNLLNF SSSKTEGRNQ  180
NPENSSECNS SIAGGVSKKP RIQHSTAQPA LKVRKEKLGD RITALHQLVS PFGKTDTASV  240
LSEAIGYIRF LQAQIEALSS PYLGNASGVS GSMGQGHQQQ SVVQDRPKDL KSRGLCLVPI  300
SCTQHVGSDN GADYWAPALG GGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-52bHLH family protein