PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027126419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARF | ||||||||
Protein Properties | Length: 852aa MW: 95267.4 Da PI: 6.9248 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.6e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_027126419.1 146 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 237 99****************************963.3334459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_027126419.1 238 GELRVGVRRA 247 99*****996 PP | |||||||
2 | Auxin_resp | 118.2 | 6.8e-39 | 272 | 354 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++++dp rWp+SkWr+Lk XP_027126419.1 272 AWHAIQTNTFFTVYYKPRTSPSEFIVPFDQYMESVKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGTEEADPKRWPESKWRCLK 354 89*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence |
MAASEVSIKG YTEPSDGPRG LPEVAKSVSG AGKVDAETAL YTELWRACAG PLVTVPREKE 60 LVYYFPQGHI EQVEASTNQV ADQAMPVYNL PWKILCRVIN VQLKAEPDTD EVFAQVTLMP 120 EPDQDENAVK KEPVPPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSRQ 180 PPTQELVAKD LHGNEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL 240 RVGVRRAMRQ QGNAPSSVIS SHSMHLGVLA TAWHAIQTNT FFTVYYKPRT SPSEFIVPFD 300 QYMESVKNSY SIGMRFKMRF EGEEAPEQRF TGTIVGTEEA DPKRWPESKW RCLKVRWDET 360 STIPRPDRVS PWKIEPALTP PALNPLPVPR PKRPRPNILP SSPDSSVLTR EGSSKITIDP 420 SPASGLSRVL QGQEPSTLRG TLGESNESDS LEKPVIWPPS LDDDKLDVCA SSRRYASDKW 480 LPFGRPESSF TDLLAGFGSQ INSPNEFSTT SADQTVVSAN SKKRQLQEHE GKLNYLGSPW 540 SLMSSGLSLN LMEPSVKTRG QGTDISYQTR GDARYGSFNE YPLLPSNRLD NQQANWLMPP 600 PMTSYIQMPP NSREMVHKPM LVPPHEVVKP KEGNCKLFGI PLISNPMPLE PASSHKNRTI 660 ESVGQLLPGM HTHRSSVSES DQRSEQPKGG KVADNVVASN EQDKQCQTFN QVTRDREGKV 720 SGGSTRSCTK VHKQGIALGR SVDLTKFNNY DELIAELDRL FEFNGELKYR TKHWLVVYTD 780 DEGDMMLVGD DPWQEFCGMV RKIFIYTREE VQRMNPGTLN SRGEEQSSVA QGLDAKEVKN 840 LLQPSASSPD DC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 396 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | ARF family protein |