PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027126343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | TCP | ||||||||
Protein Properties | Length: 422aa MW: 43542.8 Da PI: 5.4205 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.6 | 7.5e-37 | 104 | 206 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + ss s++++++ XP_027126343.1 104 APPKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngalkiPTTSSTSMTATEG-- 196 56799***********************************************************88888444321112221111111111111.. PP TCP 89 kaaksaakskksqksaa 105 + ++q++ a XP_027126343.1 197 -------DGARKQRKRA 206 .......2222222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence |
MASVENSQNL EPDDDEVNND AHDLLLGDPH HYTITAVGPA FEQSPRVAAA VDPTPSPPPP 60 PPPFLQSSDI VPMLKEEPAD NDVEGSIPVG LTPIHHLDKP MLLAPPKRSS KDRHTKVEGR 120 GRRIRMPATC AARIFQLTRE LGHKSDGETI RWLLERAEPA IIEATGTGTV PAIAVSVNGA 180 LKIPTTSSTS MTATEGDGAR KQRKRASTSE FYEVNDNSSF APVAPITPQG LVPVWTVGAH 240 GAPGMVPTSV VPSGAFFMIP PTGATIAAAA AAAGAVPPRP SNQPQLWAIP AAAATPVFGV 300 SGRPISNFVS AMEPGPSVNF ATDGGGGDEG EGRMGSALPN IVGSGDKNFS GKISAMAPFA 360 SSTSSRDGAA TVGTRATGSP TGATSAQVLR DFSLEVYDKR ELQFMVGAAA GAGNDQTPSS 420 KS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 4e-60 | TCP family protein |