PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126342.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 440aa MW: 45739.5 Da PI: 5.6484

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.5	8.1e-37	122	224	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + ss s++++++ XP_027126342.1 122 APPKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngalkiPTTSSTSMTATEG-- 214 56799***********************************************************88888444321112221111111111111.. PP TCP 89 kaaksaakskksqksaa 105 + ++q++ a XP_027126342.1 215 -------DGARKQRKRA 224 .......2222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MLLRFLGDFF YIKVFAFSMA SVENSQNLEP DDDEVNNDAH DLLLGDPHHY TITAVGPAFE 60 QSPRVAAAVD PTPSPPPPPP PFLQSSDIVP MLKEEPADND VEGSIPVGLT PIHHLDKPML 120 LAPPKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLERAEPAII 180 EATGTGTVPA IAVSVNGALK IPTTSSTSMT ATEGDGARKQ RKRASTSEFY EVNDNSSFAP 240 VAPITPQGLV PVWTVGAHGA PGMVPTSVVP SGAFFMIPPT GATIAAAAAA AGAVPPRPSN 300 QPQLWAIPAA AATPVFGVSG RPISNFVSAM EPGPSVNFAT DGGGGDEGEG RMGSALPNIV 360 GSGDKNFSGK ISAMAPFASS TSSRDGAATV GTRATGSPTG ATSAQVLRDF SLEVYDKREL 420 QFMVGAAAGA GNDQTPSSKS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MLLRFLGDFF YIKVFAFSMA SVENSQNLEP DDDEVNNDAH DLLLGDPHHY TITAVGPAFE  60
QSPRVAAAVD PTPSPPPPPP PFLQSSDIVP MLKEEPADND VEGSIPVGLT PIHHLDKPML  120
LAPPKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLERAEPAII  180
EATGTGTVPA IAVSVNGALK IPTTSSTSMT ATEGDGARKQ RKRASTSEFY EVNDNSSFAP  240
VAPITPQGLV PVWTVGAHGA PGMVPTSVVP SGAFFMIPPT GATIAAAAAA AGAVPPRPSN  300
QPQLWAIPAA AATPVFGVSG RPISNFVSAM EPGPSVNFAT DGGGGDEGEG RMGSALPNIV  360
GSGDKNFSGK ISAMAPFASS TSSRDGAATV GTRATGSPTG ATSAQVLRDF SLEVYDKREL  420
QFMVGAAAGA GNDQTPSSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-60	TCP family protein