PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126013.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 359aa MW: 41035 Da PI: 7.9142

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	96.8	2.1e-30	52	143	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+++++ed+e++++isws n++sf ++d+ +f+ ++Lpk Fkhsn+aSFv QLn YgF+k+ +e+ e+++++F++gk++ l++ XP_027126013.1 52 FLRKTFDMVEDPETNSIISWSPNNRSFTIWDHIKFSVELLPKNFKHSNLASFVSQLNNYGFRKICTEK---------YEYENPWFQAGKRHWLKH 137 9**************************************************************999.........78************ PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_027126013.1 138 IKRRNR 143 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEGKKRKAID DTGGDNGGDN GDGGGASGYG GNTRDIGQLP RRPRTGSILP HFLRKTFDMV 60 EDPETNSIIS WSPNNRSFTI WDHIKFSVEL LPKNFKHSNL ASFVSQLNNY GFRKICTEKY 120 EYENPWFQAG KRHWLKHIKR RNRQCEHDSV IQSSCGSTDN LLKGRLEDQL ETLMIEHHGL 180 KVKVEKLSEK LGNHFNKIKE IQKLIEKRKM SKYEANKNQE LDNSTSEEIS LELVAEGNCS 240 RHTNKDEQVQ EEVMVIQKEG KNFCSPDNTG GSNQEKKATA TSETFENRDF RKKMIEDDSE 300 HENGGHEELE ESHPEAILKL LDLNACNTLV QDLNAQVQTK KRKVLQLQKL LKILTSGRK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEGKKRKAID DTGGDNGGDN GDGGGASGYG GNTRDIGQLP RRPRTGSILP HFLRKTFDMV  60
EDPETNSIIS WSPNNRSFTI WDHIKFSVEL LPKNFKHSNL ASFVSQLNNY GFRKICTEKY  120
EYENPWFQAG KRHWLKHIKR RNRQCEHDSV IQSSCGSTDN LLKGRLEDQL ETLMIEHHGL  180
KVKVEKLSEK LGNHFNKIKE IQKLIEKRKM SKYEANKNQE LDNSTSEEIS LELVAEGNCS  240
RHTNKDEQVQ EEVMVIQKEG KNFCSPDNTG GSNQEKKATA TSETFENRDF RKKMIEDDSE  300
HENGGHEELE ESHPEAILKL LDLNACNTLV QDLNAQVQTK KRKVLQLQKL LKILTSGRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	LKHIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	7e-34	HSF family protein