PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125953.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LFY
Protein Properties Length: 394aa    MW: 43990.6 Da    PI: 7.2911
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY646.73.3e-19713751386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaav.seapleaaaaaaark..lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmks 92 
                     mdp+ fsaslfkwdpr+++  pp+r le  a+  ++p +++ ++  r+  l +leelf+ayG+ry+t+akiaelGft++tL++mkdeeldd+m+s
  XP_027125953.1   1 MDPDGFSASLFKWDPRSVMP-PPTRFLEGVAAaLPPPPQTMYSVRPRElgLGGLEELFQAYGIRYYTAAKIAELGFTMNTLLHMKDEELDDMMNS 94 
                     9***************9885.5555555544404444344444444443467******************************************* PP

         FLO_LFY  93 lseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkk 187
                     ls+ifr+dllvGeryGikaavraerrrleeee  ++rr+ll+ d++++ldalsqeglseepvq+ekea gsg + +g ++  ++         kk
  XP_027125953.1  95 LSQIFRWDLLVGERYGIKAAVRAERRRLEEEE--SRRRHLLTGDTTNTLDALSQEGLSEEPVQQEKEAGGSGSGAAGGQTWETVG--------KK 179
                     ******************************87..99999***************************9988877664443333333........22 PP

         FLO_LFY 188 askkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvt 282
                     + + k+k + +k l+  + ede+e+e  +e+++g++g+erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvt
  XP_027125953.1 180 QGR-KKKGRASKILT--SIEDEDESEGAEEDENGSGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVT 271
                     211.22222222222..33445556666777788889********************************************************** PP

         FLO_LFY 283 nqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqL 377
                     nqvfryakkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvPtkLrqL
  XP_027125953.1 272 NQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQL 366
                     *********************************************************************************************** PP

         FLO_LFY 378 Chlerskas 386
                     Ch+ers+a+
  XP_027125953.1 367 CHAERSNAA 375
                     ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MDPDGFSASL FKWDPRSVMP PPTRFLEGVA AALPPPPQTM YSVRPRELGL GGLEELFQAY  60
GIRYYTAAKI AELGFTMNTL LHMKDEELDD MMNSLSQIFR WDLLVGERYG IKAAVRAERR  120
RLEEEESRRR HLLTGDTTNT LDALSQEGLS EEPVQQEKEA GGSGSGAAGG QTWETVGKKQ  180
GRKKKGRASK ILTSIEDEDE SEGAEEDENG SGGSERQREH PFIVTEPGEV ARGKKNGLDY  240
LFHLYEQCRE FLIQVQNIAK ERGEKCPTKV TNQVFRYAKK AGASYINKPK MRHYVHCYAL  300
HCLDEDASNA LRRAFKERGE NVGAWRQACY KPLVAIAARQ GWDIDAIFNA HPRLSIWYVP  360
TKLRQLCHAE RSNAAAASIS VTGGGGGHTA QLPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-154LFY family protein