PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027125612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 618aa MW: 68386 Da PI: 6.5264 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 500 | 548 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l XP_027125612.1 500 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 548 8****************************99**99************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence |
METVVSMEVN EEAKVEDGIA KETGSEPVSL KHISDPDPDP EPDPVVYKLV RVDGEGRLVP 60 ATDEEVLVVE DLLEDEKPEH CAAECEQPIE CIKTEGCSLQ KNHVQSSEGI SSVQLDAAVD 120 LGKKIIQPEE IPCQMASASA GNSISQPMSA VGCPGSEGGL VENWSSRTDL ATTGKPDFSK 180 LKGEICLDNL TVKELQETFR ATFGRETFVK DKRWLKRRIS MGLTNSCDFS TTAFMIKDNE 240 VLKKDKKENR KKSAVYKDLV VGVASETAGS PTNGLNRLAD SNPNFDDRKT ESLLLEHDSV 300 REDPSLEQRT AKRVRKPTKR YIEEMSEEES RGSSGRLVSV VKSFEHSQSC SKACTMPVQN 360 VRLAGRPMVT RQDSLGGSGV QVPYVSRVRK GRPRENFMPF MPSGIGLATR TVRRALGEPG 420 PAPQDEMQNE VLKSSLSPGW NQQPIAAASE NDNHHLERKE VELEKYVELK RMDSFEDNSD 480 DNMGSVPASS GGMRRKHHRP WSLTEVVKLV EGVARYGAGR WSEIKRLAFA SYSYRTSVDL 540 KDKWRNLLRA SFSQLPAEKG MHNARKHASI PIPAPILLRV RELAEMQAQV PANFSSSKFT 600 GQSGGSDRSV HETRSGYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-101 | MYB_related family protein |