PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125611.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 618aa MW: 68386 Da PI: 6.5264

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	500	548	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l XP_027125611.1 500 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 548 8**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
METVVSMEVN EEAKVEDGIA KETGSEPVSL KHISDPDPDP EPDPVVYKLV RVDGEGRLVP 60 ATDEEVLVVE DLLEDEKPEH CAAECEQPIE CIKTEGCSLQ KNHVQSSEGI SSVQLDAAVD 120 LGKKIIQPEE IPCQMASASA GNSISQPMSA VGCPGSEGGL VENWSSRTDL ATTGKPDFSK 180 LKGEICLDNL TVKELQETFR ATFGRETFVK DKRWLKRRIS MGLTNSCDFS TTAFMIKDNE 240 VLKKDKKENR KKSAVYKDLV VGVASETAGS PTNGLNRLAD SNPNFDDRKT ESLLLEHDSV 300 REDPSLEQRT AKRVRKPTKR YIEEMSEEES RGSSGRLVSV VKSFEHSQSC SKACTMPVQN 360 VRLAGRPMVT RQDSLGGSGV QVPYVSRVRK GRPRENFMPF MPSGIGLATR TVRRALGEPG 420 PAPQDEMQNE VLKSSLSPGW NQQPIAAASE NDNHHLERKE VELEKYVELK RMDSFEDNSD 480 DNMGSVPASS GGMRRKHHRP WSLTEVVKLV EGVARYGAGR WSEIKRLAFA SYSYRTSVDL 540 KDKWRNLLRA SFSQLPAEKG MHNARKHASI PIPAPILLRV RELAEMQAQV PANFSSSKFT 600 GQSGGSDRSV HETRSGYL

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

METVVSMEVN EEAKVEDGIA KETGSEPVSL KHISDPDPDP EPDPVVYKLV RVDGEGRLVP  60
ATDEEVLVVE DLLEDEKPEH CAAECEQPIE CIKTEGCSLQ KNHVQSSEGI SSVQLDAAVD  120
LGKKIIQPEE IPCQMASASA GNSISQPMSA VGCPGSEGGL VENWSSRTDL ATTGKPDFSK  180
LKGEICLDNL TVKELQETFR ATFGRETFVK DKRWLKRRIS MGLTNSCDFS TTAFMIKDNE  240
VLKKDKKENR KKSAVYKDLV VGVASETAGS PTNGLNRLAD SNPNFDDRKT ESLLLEHDSV  300
REDPSLEQRT AKRVRKPTKR YIEEMSEEES RGSSGRLVSV VKSFEHSQSC SKACTMPVQN  360
VRLAGRPMVT RQDSLGGSGV QVPYVSRVRK GRPRENFMPF MPSGIGLATR TVRRALGEPG  420
PAPQDEMQNE VLKSSLSPGW NQQPIAAASE NDNHHLERKE VELEKYVELK RMDSFEDNSD  480
DNMGSVPASS GGMRRKHHRP WSLTEVVKLV EGVARYGAGR WSEIKRLAFA SYSYRTSVDL  540
KDKWRNLLRA SFSQLPAEKG MHNARKHASI PIPAPILLRV RELAEMQAQV PANFSSSKFT  600
GQSGGSDRSV HETRSGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-101	MYB_related family protein