PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125403.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 454aa MW: 49619 Da PI: 8.9301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.4	1.9e-16	249	295	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_027125403.1 249 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 295 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MSHHFVVPNW NLRHQRQDQL DGGDGNRSSH VQNHQNPSYV VPMLNHEVAE LTWENGQLAM 60 HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ MMNSMQSQKH DDGDQKLSSK 120 INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG RFFSGKIHDL GQERSACASA 180 SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG GLENRDEEQE AKGGIVQSCS 240 ARRSRSAAVH NQSERRRRDR INQKMKALQK LVPNASKTDK ASMLDEVIDY LKQLQAQVHM 300 MGTGAMPQMM MTPLAMQQQL QMSLLARLGM GAGVGVGMGM GMLDINSMAR TAPLSLQPFM 360 HSTPIASAPP TFVPPPLVMP PRIPACTPPP ATANATTTTI NASGAFSDPY SSFLAQQTVN 420 MDFYSKMAAL FRQQANQTSA TASNPLQPNF NQGK

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MSHHFVVPNW NLRHQRQDQL DGGDGNRSSH VQNHQNPSYV VPMLNHEVAE LTWENGQLAM  60
HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ MMNSMQSQKH DDGDQKLSSK  120
INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG RFFSGKIHDL GQERSACASA  180
SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG GLENRDEEQE AKGGIVQSCS  240
ARRSRSAAVH NQSERRRRDR INQKMKALQK LVPNASKTDK ASMLDEVIDY LKQLQAQVHM  300
MGTGAMPQMM MTPLAMQQQL QMSLLARLGM GAGVGVGMGM GMLDINSMAR TAPLSLQPFM  360
HSTPIASAPP TFVPPPLVMP PRIPACTPPP ATANATTTTI NASGAFSDPY SSFLAQQTVN  420
MDFYSKMAAL FRQQANQTSA TASNPLQPNF NQGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	259	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61270.1	5e-29	bHLH family protein