PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027125402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 49747.1 Da PI: 8.9301 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.4 | 1.9e-16 | 250 | 296 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_027125402.1 250 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 296 6*************************9.....7******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 455 aa Download sequence |
MSHHFVVPNW NLRHQRQDQL DGGDGNRSSH VQNHQNPSYV VPMLNHEVAE LTWENGQLAM 60 HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ MMNSMQSQKH DDGDQKLSSK 120 INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG RFFSGKIHDL GQERSACASA 180 SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG GLQENRDEEQ EAKGGIVQSC 240 SARRSRSAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD KASMLDEVID YLKQLQAQVH 300 MMGTGAMPQM MMTPLAMQQQ LQMSLLARLG MGAGVGVGMG MGMLDINSMA RTAPLSLQPF 360 MHSTPIASAP PTFVPPPLVM PPRIPACTPP PATANATTTT INASGAFSDP YSSFLAQQTV 420 NMDFYSKMAA LFRQQANQTS ATASNPLQPN FNQGK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 255 | 260 | ERRRRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61270.1 | 7e-30 | bHLH family protein |