PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125381.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 396aa MW: 42938.7 Da PI: 9.5339

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.7	1.6e-16	191	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_027125381.1 191 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 237 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MHGLSNILPS PAPTKSTCGR AGDHTLESIV HQATCHHKHS QMMNSMQSQK HDDGDQKLSS 60 KINSTLEFSG TKWGKSSGQV QMLPSTMKKR LRSETESDQC GRFFSGKIHD LGQERSACAS 120 ASATLCRDNN KDATMVTWAS FESPSSCKTK NTTDEDSASH GGLQENRDEE QEAKGGIVQS 180 CSARRSRSAA VHNQSERRRR DRINQKMKAL QKLVPNASKT DKASMLDEVI DYLKQLQAQV 240 HMMGTGAMPQ MMMTPLAMQQ QLQMSLLARL GMGAGVGVGM GMGMLDINSM ARTAPLSLQP 300 FMHSTPIASA PPTFVPPPLV MPPRIPACTP PPATANATTT TINASGAFSD PYSSFLAQQT 360 VNMDFYSKMA ALFRQQANQT SATASNPLQP NFNQGK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MHGLSNILPS PAPTKSTCGR AGDHTLESIV HQATCHHKHS QMMNSMQSQK HDDGDQKLSS  60
KINSTLEFSG TKWGKSSGQV QMLPSTMKKR LRSETESDQC GRFFSGKIHD LGQERSACAS  120
ASATLCRDNN KDATMVTWAS FESPSSCKTK NTTDEDSASH GGLQENRDEE QEAKGGIVQS  180
CSARRSRSAA VHNQSERRRR DRINQKMKAL QKLVPNASKT DKASMLDEVI DYLKQLQAQV  240
HMMGTGAMPQ MMMTPLAMQQ QLQMSLLARL GMGAGVGVGM GMGMLDINSM ARTAPLSLQP  300
FMHSTPIASA PPTFVPPPLV MPPRIPACTP PPATANATTT TINASGAFSD PYSSFLAQQT  360
VNMDFYSKMA ALFRQQANQT SATASNPLQP NFNQGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	201	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-26	bHLH family protein