PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125380.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 415aa MW: 45146.1 Da PI: 9.1336

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.6	1.7e-16	210	256	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_027125380.1 210 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 256 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MNRLNHEVAE LTWENGQLAM HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ 60 MMNSMQSQKH DDGDQKLSSK INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG 120 RFFSGKIHDL GQERSACASA SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG 180 GLQENRDEEQ EAKGGIVQSC SARRSRSAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD 240 KASMLDEVID YLKQLQAQVH MMGTGAMPQM MMTPLAMQQQ LQMSLLARLG MGAGVGVGMG 300 MGMLDINSMA RTAPLSLQPF MHSTPIASAP PTFVPPPLVM PPRIPACTPP PATANATTTT 360 INASGAFSDP YSSFLAQQTV NMDFYSKMAA LFRQQANQTS ATASNPLQPN FNQGK

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MNRLNHEVAE LTWENGQLAM HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ  60
MMNSMQSQKH DDGDQKLSSK INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG  120
RFFSGKIHDL GQERSACASA SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG  180
GLQENRDEEQ EAKGGIVQSC SARRSRSAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD  240
KASMLDEVID YLKQLQAQVH MMGTGAMPQM MMTPLAMQQQ LQMSLLARLG MGAGVGVGMG  300
MGMLDINSMA RTAPLSLQPF MHSTPIASAP PTFVPPPLVM PPRIPACTPP PATANATTTT  360
INASGAFSDP YSSFLAQQTV NMDFYSKMAA LFRQQANQTS ATASNPLQPN FNQGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61270.1	4e-30	bHLH family protein