PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125378.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 455aa MW: 49747.1 Da PI: 8.9301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.4	1.9e-16	250	296	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_027125378.1 250 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLQ 296 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MSHHFVVPNW NLRHQRQDQL DGGDGNRSSH VQNHQNPSYV VPMLNHEVAE LTWENGQLAM 60 HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ MMNSMQSQKH DDGDQKLSSK 120 INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG RFFSGKIHDL GQERSACASA 180 SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG GLQENRDEEQ EAKGGIVQSC 240 SARRSRSAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD KASMLDEVID YLKQLQAQVH 300 MMGTGAMPQM MMTPLAMQQQ LQMSLLARLG MGAGVGVGMG MGMLDINSMA RTAPLSLQPF 360 MHSTPIASAP PTFVPPPLVM PPRIPACTPP PATANATTTT INASGAFSDP YSSFLAQQTV 420 NMDFYSKMAA LFRQQANQTS ATASNPLQPN FNQGK

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MSHHFVVPNW NLRHQRQDQL DGGDGNRSSH VQNHQNPSYV VPMLNHEVAE LTWENGQLAM  60
HGLSNILPSP APTKSTCGRA GDHTLESIVH QATCHHKHSQ MMNSMQSQKH DDGDQKLSSK  120
INSTLEFSGT KWGKSSGQVQ MLPSTMKKRL RSETESDQCG RFFSGKIHDL GQERSACASA  180
SATLCRDNNK DATMVTWASF ESPSSCKTKN TTDEDSASHG GLQENRDEEQ EAKGGIVQSC  240
SARRSRSAAV HNQSERRRRD RINQKMKALQ KLVPNASKTD KASMLDEVID YLKQLQAQVH  300
MMGTGAMPQM MMTPLAMQQQ LQMSLLARLG MGAGVGVGMG MGMLDINSMA RTAPLSLQPF  360
MHSTPIASAP PTFVPPPLVM PPRIPACTPP PATANATTTT INASGAFSDP YSSFLAQQTV  420
NMDFYSKMAA LFRQQANQTS ATASNPLQPN FNQGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61270.1	7e-30	bHLH family protein