PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125353.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28205.9 Da    PI: 9.55
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  XP_027125353.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
                    79***********************************************86 PP
2K-box109.43.8e-36801746100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        +e + +  ++ e+akLk++ie Lqr+qRh++GedL++Lsl+eLq+Le+qL+++lk+iRs+Kn+l++e+i elqkk k+lqe+n+ L kk++e
  XP_027125353.1  80 LGGAEIESQGCWSLEHAKLKARIEVLQRNQRHYMGEDLDNLSLRELQNLEHQLDTALKHIRSRKNQLMFESIAELQKKDKALQEQNNVLAKKVKE 174
                     55556677789*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQL GGAEIESQGC WSLEHAKLKA RIEVLQRNQR HYMGEDLDNL  120
SLRELQNLEH QLDTALKHIR SRKNQLMFES IAELQKKDKA LQEQNNVLAK KVKEKEKEQA  180
QQPQWEQQNR HDLNSSSLVR SQPINSLSIS ETYHRGGDNE AEGTQSSQTN AVMHPWMLRQ  240
MN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-98MIKC_MADS family protein