PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125295.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 209aa MW: 23935 Da PI: 9.6409

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.8	1.7e-20	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l++a++ +G+++WktIa++ g++R++k+c++rw +yl XP_027125295.1 28 RGSWTDEEDRKLAEAIEIYGPKRWKTIASKAGLKRCGKSCRLRWMNYL 75 89********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	81	126	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l XP_027125295.1 81 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 126 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MDDHESVKEE VNPAVMLKNQ SAEKGANRGS WTDEEDRKLA EAIEIYGPKR WKTIASKAGL 60 KRCGKSCRLR WMNYLRPNIK RGNISDQEED LIVRLHKLLG NRWSLIAGRL PGRTDNEIKN 120 YWNSHLSKKV HQKEKQSKGT AEMGCSRIRK KRKAMNEVKA DRTREGNSSS GGAPGDSKLS 180 FDVDDFFDFS NEDPMTLEWI SKFTEMDDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	1e-54	MYB family protein