PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125161.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 793aa MW: 88921.1 Da PI: 5.2533

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.7	4.9e-18	608	652	3	47
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++++ e+++k+ +l++kdAAk+L v++++LKr+CR++GI+RWP+ XP_027125161.1 608 DKLDRETIEKHSHLTLKDAAKSLRVSPSTLKRKCRKFGIPRWPRK 652 57899**************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence
MAEVRTRCPN DVEDIDGTFS KSEFLDYIGT KLHTSVSTSR KSFRVFWDEE DDESNSYQTL 60 FSQVGPPLLP PPIVKDKIKI ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC 120 LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD YVDVDVDWNG GGGVRESVLL TGPPSRVFLR 180 GLPEYSPSVE FYADSEYPLR DEAMGRKISD YMAVPVFDPN SRECIGVIEL VSTADSVREM 240 DKPAYIFGLI STALQGVELR TSNFTSDFDL ESDLAKSSTD ISHALRDIRK ALGDACQTHN 300 LPFAQTWMPQ LGKCHSYTDN ALSTTSNEYY LSHARFSLFR DTCESFPLLR GRGVVWKSYS 360 TGYPCFCRDV TKLSIADYSF AHVGKKVLLD SSLAICLKSD HTGNDVYVLE LFLPFKTADP 420 RKLLESVLLT MKKHLNSFRL ASGHTLEDEM FVEVLKVLKE DKFDLFRLFH TDGGSDELLD 480 RGSSIHQQLF PDDQNWLLSS INTANTLIAD EQRLEDLVSY PRLLEASDSK LSLVTGDDLA 540 AWKEDSCDTQ SVKEGNSNIN SSASTFSFPA QDNLESLVAE DAGFNAPLSR DVDFSVNKES 600 ISSASDLDKL DRETIEKHSH LTLKDAAKSL RVSPSTLKRK CRKFGIPRWP RKRNQGTCSP 660 TSTESNKDRE IPNAEYGQEV SHPNVSSQEG TNSSKHNSLQ AATIAKDSFM MIKAAYGGIK 720 KIKFQLRFSS RLVDMEMEAA SRLKLKVGDF KFWYLDEDDD WILITCDADV RTMESMGKNT 780 IKVSITHGDD APS

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence

MAEVRTRCPN DVEDIDGTFS KSEFLDYIGT KLHTSVSTSR KSFRVFWDEE DDESNSYQTL  60
FSQVGPPLLP PPIVKDKIKI ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC  120
LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD YVDVDVDWNG GGGVRESVLL TGPPSRVFLR  180
GLPEYSPSVE FYADSEYPLR DEAMGRKISD YMAVPVFDPN SRECIGVIEL VSTADSVREM  240
DKPAYIFGLI STALQGVELR TSNFTSDFDL ESDLAKSSTD ISHALRDIRK ALGDACQTHN  300
LPFAQTWMPQ LGKCHSYTDN ALSTTSNEYY LSHARFSLFR DTCESFPLLR GRGVVWKSYS  360
TGYPCFCRDV TKLSIADYSF AHVGKKVLLD SSLAICLKSD HTGNDVYVLE LFLPFKTADP  420
RKLLESVLLT MKKHLNSFRL ASGHTLEDEM FVEVLKVLKE DKFDLFRLFH TDGGSDELLD  480
RGSSIHQQLF PDDQNWLLSS INTANTLIAD EQRLEDLVSY PRLLEASDSK LSLVTGDDLA  540
AWKEDSCDTQ SVKEGNSNIN SSASTFSFPA QDNLESLVAE DAGFNAPLSR DVDFSVNKES  600
ISSASDLDKL DRETIEKHSH LTLKDAAKSL RVSPSTLKRK CRKFGIPRWP RKRNQGTCSP  660
TSTESNKDRE IPNAEYGQEV SHPNVSSQEG TNSSKHNSLQ AATIAKDSFM MIKAAYGGIK  720
KIKFQLRFSS RLVDMEMEAA SRLKLKVGDF KFWYLDEDDD WILITCDADV RTMESMGKNT  780
IKVSITHGDD APS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-59	Nin-like family protein