PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125160.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 794aa MW: 89049.2 Da PI: 5.2533

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.7	4.9e-18	609	653	3	47
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++++ e+++k+ +l++kdAAk+L v++++LKr+CR++GI+RWP+ XP_027125160.1 609 DKLDRETIEKHSHLTLKDAAKSLRVSPSTLKRKCRKFGIPRWPRK 653 57899**************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence
MAEVRTRCPN DVEDIDGTFS KSEFLDYIGT KLHTSVSTSR KSFRVFWDEE DDESNSYQTL 60 FSQVGPPLLP PPIVKDKIKI ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC 120 LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD YVDVDVDWNG GGGVRESVLL TGPPSRVFLR 180 GLPEYSPSVE FYADSEYPLR DEAMGRKISD YMAVPVFDPN SRECIGVIEL VSTADSVREM 240 DKPAYIFGLI STALQGVELR TSNFTSDFDL ESDLAKQSST DISHALRDIR KALGDACQTH 300 NLPFAQTWMP QLGKCHSYTD NALSTTSNEY YLSHARFSLF RDTCESFPLL RGRGVVWKSY 360 STGYPCFCRD VTKLSIADYS FAHVGKKVLL DSSLAICLKS DHTGNDVYVL ELFLPFKTAD 420 PRKLLESVLL TMKKHLNSFR LASGHTLEDE MFVEVLKVLK EDKFDLFRLF HTDGGSDELL 480 DRGSSIHQQL FPDDQNWLLS SINTANTLIA DEQRLEDLVS YPRLLEASDS KLSLVTGDDL 540 AAWKEDSCDT QSVKEGNSNI NSSASTFSFP AQDNLESLVA EDAGFNAPLS RDVDFSVNKE 600 SISSASDLDK LDRETIEKHS HLTLKDAAKS LRVSPSTLKR KCRKFGIPRW PRKRNQGTCS 660 PTSTESNKDR EIPNAEYGQE VSHPNVSSQE GTNSSKHNSL QAATIAKDSF MMIKAAYGGI 720 KKIKFQLRFS SRLVDMEMEA ASRLKLKVGD FKFWYLDEDD DWILITCDAD VRTMESMGKN 780 TIKVSITHGD DAPS

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence

MAEVRTRCPN DVEDIDGTFS KSEFLDYIGT KLHTSVSTSR KSFRVFWDEE DDESNSYQTL  60
FSQVGPPLLP PPIVKDKIKI ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC  120
LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD YVDVDVDWNG GGGVRESVLL TGPPSRVFLR  180
GLPEYSPSVE FYADSEYPLR DEAMGRKISD YMAVPVFDPN SRECIGVIEL VSTADSVREM  240
DKPAYIFGLI STALQGVELR TSNFTSDFDL ESDLAKQSST DISHALRDIR KALGDACQTH  300
NLPFAQTWMP QLGKCHSYTD NALSTTSNEY YLSHARFSLF RDTCESFPLL RGRGVVWKSY  360
STGYPCFCRD VTKLSIADYS FAHVGKKVLL DSSLAICLKS DHTGNDVYVL ELFLPFKTAD  420
PRKLLESVLL TMKKHLNSFR LASGHTLEDE MFVEVLKVLK EDKFDLFRLF HTDGGSDELL  480
DRGSSIHQQL FPDDQNWLLS SINTANTLIA DEQRLEDLVS YPRLLEASDS KLSLVTGDDL  540
AAWKEDSCDT QSVKEGNSNI NSSASTFSFP AQDNLESLVA EDAGFNAPLS RDVDFSVNKE  600
SISSASDLDK LDRETIEKHS HLTLKDAAKS LRVSPSTLKR KCRKFGIPRW PRKRNQGTCS  660
PTSTESNKDR EIPNAEYGQE VSHPNVSSQE GTNSSKHNSL QAATIAKDSF MMIKAAYGGI  720
KKIKFQLRFS SRLVDMEMEA ASRLKLKVGD FKFWYLDEDD DWILITCDAD VRTMESMGKN  780
TIKVSITHGD DAPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-59	Nin-like family protein