PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125128.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 276aa    MW: 30928.1 Da    PI: 8.887
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.41.8e-31119175158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep++VNaKQ+++I++RR++Rak+e+++kl +k+rkpylheSRh+hAl+R+RgsgGrF
  XP_027125128.1 119 DEPIFVNAKQFKAIMRRRESRAKQEAQNKL-SKNRKPYLHESRHRHALNRARGSGGRF 175
                     79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MEFLQMIAFY LSSSTFALIF NCLVCKFFIF CFIFLVCAGW CGLHAKPEED PSKSSVLFQD  60
YIFPCSSIDY RQHATYPFNY TDPYNHGLVA AYGPHSVVHS QMMGMTPIRV PLPLDAAQDE  120
PIFVNAKQFK AIMRRRESRA KQEAQNKLSK NRKPYLHESR HRHALNRARG SGGRFLNTKE  180
LQEAKAVAKT NDKETSGSLQ LQLNMETTEP EVCQTGNKKD GISITACSDI TSASNGDDAL  240
QRQDFRFSGY RPHVGSFVAS GGSGRTGGVQ QFLSIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-50NF-YA family protein