PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125023.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 624aa MW: 67429.6 Da PI: 7.1047

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	271	330	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r aed +++++tYeg+Hnh+ XP_027125023.1 271 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApNCPVRKQVQRYAEDMSILTTTYEGTHNHP 330 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MDMEAAYGGN SVKKEDQEKK AESSGDEDCC TEEVLHKVGN GRRAQDDKIN QSSPNRKDFT 60 SSIQGSFMPK MEMSSSEFNS NVSSSALAGR ADLLKSTKAE MGEVMEENQK LRMHLDRVMK 120 EYRALQMQFH DMVQQEPNKS SSTISTHRET GEPELVSLSL GMSSSDGKKD DHFSRKIHGK 180 EKVDNDDDDK EVLALGLDCK FELPKYQENE PSPNPSLAAS SGEVKEEEGG KTWPPKNSLK 240 NVRNEEDEVS QQNPAKRARV SVRVRCDTPT MNDGCQWRKY GQKTAKGNPC PRAYYRCTVA 300 PNCPVRKQVQ RYAEDMSILT TTYEGTHNHP LPISATAMAS TTSAAASMLM SGSTTSTSGL 360 SPSAASILSS ASFNGLNFYL SDNTKPTPIY LPNSSLSSSS SCPTITLDLT TSSNASSHLS 420 KLGNFPPRSY STTQNLNFSP LESNALPLSW SNGVLSYGPQ AQPYNKNQNI GSLNFGRQLQ 480 EAHYQSYLQK NNSISNSSSQ QSLPAETLAA ATKAIASDPS FQSALAAALT SIIGPGTSST 540 ARVLGSQTAA DKSGHNLKLN DQSFPILSSF PPSTSTVNKC ASTFLSSSNP PSSANSQPGS 600 LMFLSPSLSF PSPNNNSTSN VRLH

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MDMEAAYGGN SVKKEDQEKK AESSGDEDCC TEEVLHKVGN GRRAQDDKIN QSSPNRKDFT  60
SSIQGSFMPK MEMSSSEFNS NVSSSALAGR ADLLKSTKAE MGEVMEENQK LRMHLDRVMK  120
EYRALQMQFH DMVQQEPNKS SSTISTHRET GEPELVSLSL GMSSSDGKKD DHFSRKIHGK  180
EKVDNDDDDK EVLALGLDCK FELPKYQENE PSPNPSLAAS SGEVKEEEGG KTWPPKNSLK  240
NVRNEEDEVS QQNPAKRARV SVRVRCDTPT MNDGCQWRKY GQKTAKGNPC PRAYYRCTVA  300
PNCPVRKQVQ RYAEDMSILT TTYEGTHNHP LPISATAMAS TTSAAASMLM SGSTTSTSGL  360
SPSAASILSS ASFNGLNFYL SDNTKPTPIY LPNSSLSSSS SCPTITLDLT TSSNASSHLS  420
KLGNFPPRSY STTQNLNFSP LESNALPLSW SNGVLSYGPQ AQPYNKNQNI GSLNFGRQLQ  480
EAHYQSYLQK NNSISNSSSQ QSLPAETLAA ATKAIASDPS FQSALAAALT SIIGPGTSST  540
ARVLGSQTAA DKSGHNLKLN DQSFPILSSF PPSTSTVNKC ASTFLSSSNP PSSANSQPGS  600
LMFLSPSLSF PSPNNNSTSN VRLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	4e-55	WRKY family protein