PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124823.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 432aa MW: 48820.6 Da PI: 4.519

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.8	1.3e-09	17	59	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ + +k++++fC ++ +lC+ C ++ H+ H++ XP_027124823.1 17 ARACDSCLKKRARWFCAADDAFLCQACDTSVHSAnqlasrHER 59 578*****************************65777777776 PP
2	CCT	68.8	1.5e-23	376	419	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_027124823.1 376 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 419 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MMITEGKTAN VLGGKTARAC DSCLKKRARW FCAADDAFLC QACDTSVHSA NQLASRHERI 60 RLATSSFMPI ETKGDENSLP TWHQGFTRKA RTPRNNKASL VHQPKDEEKM AKANPLPLVP 120 EISGDETSPD ESEEQHLFCR VPVFDPFAAE LCSELSDEVQ NIQADKGTHD EILTSNELNV 180 LLNDDQDLDI PELIASDAEL AEFAADVESL LGTGLDEDSC DMEDPGMMVC KEEDDVVDVS 240 FEDEVVKVED EDDQEVQAVI ACHLDPALDM ARESLNWDFD SSSPVIEEEE ELKVTKDMPD 300 KDIKSKEEER RMMHLKLNYE EVITAWASQG SPWADGTKPE LNLGDCWPDF MGMSLNELHH 360 PNGAGGGRVS SRDEEREARV TRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS 420 FAGPSFPYLM KK

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MMITEGKTAN VLGGKTARAC DSCLKKRARW FCAADDAFLC QACDTSVHSA NQLASRHERI  60
RLATSSFMPI ETKGDENSLP TWHQGFTRKA RTPRNNKASL VHQPKDEEKM AKANPLPLVP  120
EISGDETSPD ESEEQHLFCR VPVFDPFAAE LCSELSDEVQ NIQADKGTHD EILTSNELNV  180
LLNDDQDLDI PELIASDAEL AEFAADVESL LGTGLDEDSC DMEDPGMMVC KEEDDVVDVS  240
FEDEVVKVED EDDQEVQAVI ACHLDPALDM ARESLNWDFD SSSPVIEEEE ELKVTKDMPD  300
KDIKSKEEER RMMHLKLNYE EVITAWASQG SPWADGTKPE LNLGDCWPDF MGMSLNELHH  360
PNGAGGGRVS SRDEEREARV TRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS  420
FAGPSFPYLM KK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	403	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-78	CO-like family protein