PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124732.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 569aa    MW: 63422 Da    PI: 7.2658
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.86.5e-781865632374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL  cA a+++++ +++q+lL  ++elas +gd+++Rlaa+ ++AL+++la+ +s + +a +++ +s +n +  + +l  fs++ P++++ + 
  XP_027124732.1 186 EQLLNPCAAAITASNPSRVQHLLYVINELASLTGDANHRLAAHGLRALKHHLASPGSPVTSAGSTTFAS-TNPKFFTESLINFSDINPWFRIPNS 279
                     689***************************************************999999887666665.677888888888************* PP

            GRAS  97 taNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfef 178
                     +aN+ Il+ ++++   + +Hi+D ++s+G+QWp+Ll++L+ R+ ++pp +RiT + + +++          + +  +  ++L  fA+++++++++
  XP_027124732.1 280 IANSSILQILQEQnqpRNLHIVDVGVSHGIQWPTLLEELTRRSgGPPPLVRITLITRTNHEeqsrntpfaASPSGYNCSSQLLGFAKKININLQI 374
                     **********999888899************************55666*******9987778889999988889999****************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfds 270
                     n l    l++l+ + ++ +p+E+l+++ +++lh+l    ++ ++ r+ +Lk+++s++Pk vv++e++ad+   n  +F+++f++ +ey + ++ds
  XP_027124732.1 375 NRLDNFPLQNLNSQVIKSSPDETLIICTQFRLHNLN---HNNPDDRTYFLKVLRSMEPKGVVLTENNADCschNCVDFATGFSRRVEYLWRFLDS 466
                     **8777*****************************8...66666778*******************9775324777******************* PP

            GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                      ++ +    + r + Er++++ e+ ++++++g++    +e++ekW er+ ++GF+   ++e+a++ a++llrk++ +++ rve+++g++ l Wk+
  XP_027124732.1 467 ASVAY----KGRESDERRMMEGEAAKALTNAGEM----NERKEKWCERMASVGFSRQVFGEDAVDGARALLRKYDsNWEIRVEDRDGCVGLWWKG 553
                     *8885....66666677777778999******99....88888********************************9999**************** PP

            GRAS 365 rpLvsvSaWr 374
                     +p+ ++S W+
  XP_027124732.1 554 QPVSFCSLWK 563
                     *********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    
MTKYHHQQLL SHPSSSLSQP ILDSSKMINE EPDPNPMSDH NILEWIEGSL PFLPPIFDDP  60
YDSWWQLHVP APDQEQINRC STSFDSNVST VTAATSATLP EPPAIPSDHP RPSDSSKKRK  120
ASDDHAPKTS QISRKSQNRR NNNEGDEGET IVEQGLVPAR KSSGSKKAAA KSGGNTCNNK  180
DGRWAEQLLN PCAAAITASN PSRVQHLLYV INELASLTGD ANHRLAAHGL RALKHHLASP  240
GSPVTSAGST TFASTNPKFF TESLINFSDI NPWFRIPNSI ANSSILQILQ EQNQPRNLHI  300
VDVGVSHGIQ WPTLLEELTR RSGGPPPLVR ITLITRTNHE EQSRNTPFAA SPSGYNCSSQ  360
LLGFAKKINI NLQINRLDNF PLQNLNSQVI KSSPDETLII CTQFRLHNLN HNNPDDRTYF  420
LKVLRSMEPK GVVLTENNAD CSCHNCVDFA TGFSRRVEYL WRFLDSASVA YKGRESDERR  480
MMEGEAAKAL TNAGEMNERK EKWCERMASV GFSRQVFGED AVDGARALLR KYDSNWEIRV  540
EDRDGCVGLW WKGQPVSFCS LWKIAPDTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-156GRAS family protein