PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124669.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 193aa MW: 21461.1 Da PI: 7.8721

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.5	6.6e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+e+l++el+ XP_027124669.1 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNELLPHQREDAVNSLAYEAEARVKDPVYGCVGAISFLQRQVERLQKELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_027124669.1 105 AANA 108 9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNELLP 60 HQREDAVNSL AYEAEARVKD PVYGCVGAIS FLQRQVERLQ KELDAANADL IRYACNDHIQ 120 PELSGPHGAM HQVHQPMTPR QRPVEYNNTR RMGNEGGGFY QTPNFQYPYH LPWNDNDIHR 180 YGGGGGGGGG GHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	9e-76	LBD family protein