PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124636.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 384aa MW: 42656.6 Da PI: 6.7913

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	7.1e-16	57	116	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_027124636.1 57 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 116 78*****************999955656446***********************98 PP
2	AP2	51.1	3.4e-16	159	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_027124636.1 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 210 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MAKSSKQKTS STTTTTTTSI DADNNNSSNS TTPVVKTTKT KRTRKSVPRD SPQQRSSVYR 60 GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI 120 LNFPLSTYGN ELSEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV 180 FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYVKRLRPNQ TGNGVNNVAS 240 SEQNPNVDLE VNPIKDDASE EVDLSFIHQQ QQQQHSSSSP DTSTTTTTTT TAPQPCPAGG 300 ATASSASGLL LQSSKCKEML ERASAVDSPS TPPEQPEPPR RSFPDDIQTY FACQDSGNFA 360 DEHDNIFGDY NPFASTMFPC ELDA

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MAKSSKQKTS STTTTTTTSI DADNNNSSNS TTPVVKTTKT KRTRKSVPRD SPQQRSSVYR  60
GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI  120
LNFPLSTYGN ELSEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  180
FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYVKRLRPNQ TGNGVNNVAS  240
SEQNPNVDLE VNPIKDDASE EVDLSFIHQQ QQQQHSSSSP DTSTTTTTTT TAPQPCPAGG  300
ATASSASGLL LQSSKCKEML ERASAVDSPS TPPEQPEPPR RSFPDDIQTY FACQDSGNFA  360
DEHDNIFGDY NPFASTMFPC ELDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-88	AP2 family protein