PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124438.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 410aa MW: 45716.7 Da PI: 4.5566

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.5e-15	105	150	3	52
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ykGVr +k +g+++AeIrdp +r kr++lg+++ +e+Aa+ + a +++ XP_027124438.1 105 YKGVRKRK-WGKYAAEIRDP----IRgKRVWLGTYDNEEDAARVYQAKKLE 150 9**999.******7....246**************99988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MLNLVDMMDK QENKDQKVRN MEEILKSVKR IRITYTDPDA TDSDSNSDDQ FKDRRNKRKE 60 IVINRDLPPG SPCVQAPKEH FANAYRISCN IGEFSKKSQK SSSMYKGVRK RKWGKYAAEI 120 RDPIRGKRVW LGTYDNEEDA ARVYQAKKLE FDRIMADRKA NLSSSGASAV EGSVACGSAS 180 EETNALCSHP SPSSVLEIST SAPMAKESLQ AGGGAKLNRT EDVEPLLSGS TENGLILPLV 240 CQDFNPRPDD GLLYCSNMGK QAISILVEDA SREQPVVSSI NEPSDFSHAI KEMEGWQPFS 300 NNQSVNKDSI LNTKDQLFNG NNAVGLETST SPADSPVPPS ISAHLNFEEN LRYDNDLKEL 360 GFEENLTYSN RSDEPFDCLS QDISMGQPEL DEEEIAWLNK DLFNDDQFCN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MLNLVDMMDK QENKDQKVRN MEEILKSVKR IRITYTDPDA TDSDSNSDDQ FKDRRNKRKE  60
IVINRDLPPG SPCVQAPKEH FANAYRISCN IGEFSKKSQK SSSMYKGVRK RKWGKYAAEI  120
RDPIRGKRVW LGTYDNEEDA ARVYQAKKLE FDRIMADRKA NLSSSGASAV EGSVACGSAS  180
EETNALCSHP SPSSVLEIST SAPMAKESLQ AGGGAKLNRT EDVEPLLSGS TENGLILPLV  240
CQDFNPRPDD GLLYCSNMGK QAISILVEDA SREQPVVSSI NEPSDFSHAI KEMEGWQPFS  300
NNQSVNKDSI LNTKDQLFNG NNAVGLETST SPADSPVPPS ISAHLNFEEN LRYDNDLKEL  360
GFEENLTYSN RSDEPFDCLS QDISMGQPEL DEEEIAWLNK DLFNDDQFCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	112	KGVRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	5e-21	ERF family protein