PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124265.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 832aa MW: 95828.2 Da PI: 7.1408

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	1.9e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ ++ ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027124265.1 26 QFYNKYAFKMGFSVRKDYLNED-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIALFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence
MDCSKLAEDG TPELGMEFNS EEDAYQFYNK YAFKMGFSVR KDYLNEDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IALFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELLGKEAGGM ENVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WTDAGMLIDY QFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIMIFGAA LMYDETIDSF KWVFGTFVEA MCGKRPSTIL 300 TDQDHAMVAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW LSELYRIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVIV 480 AFQNEYGEST AMVILRQQDA AMIVEFAVMR YDEGPERIVV FNRNDLSVRC SCKKYENEGI 540 LCGHALKVFD TLGIKIIPPE YIKRRWTKRA RAGDCFDRRR REVVADPKIM ISTRYRELAP 600 AMIKVATRAA MSEDTSKVAI TVISDLAKRV ELLLSESEEQ PLQNPKNLNM EERDKIEIVN 660 EMGEAVVARG IKKRGGGKKS RVMRSWIDKF DRVKRKSRLS RTTQTTASES EPTSVSVEEP 720 MFMGCRSSTD SVSTHSMSQT VNGPPNAIAP NIDESETVHL LANQGPPTSV PTEWMHPRFS 780 IFSKYNSVRD VLMEERAALL THCDVDAYHG RNNTQGLQLR VDVASPENEI DE

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence

MDCSKLAEDG TPELGMEFNS EEDAYQFYNK YAFKMGFSVR KDYLNEDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IALFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSE AQGFQAEISE DAGLSLKQSH ELLGKEAGGM ENVGYTREDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WTDAGMLIDY QFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIMIFGAA LMYDETIDSF KWVFGTFVEA MCGKRPSTIL  300
TDQDHAMVAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYEFEEVE  360
QFNRVWEAMV KKHNLENNEW LSELYRIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH  420
LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVIV  480
AFQNEYGEST AMVILRQQDA AMIVEFAVMR YDEGPERIVV FNRNDLSVRC SCKKYENEGI  540
LCGHALKVFD TLGIKIIPPE YIKRRWTKRA RAGDCFDRRR REVVADPKIM ISTRYRELAP  600
AMIKVATRAA MSEDTSKVAI TVISDLAKRV ELLLSESEEQ PLQNPKNLNM EERDKIEIVN  660
EMGEAVVARG IKKRGGGKKS RVMRSWIDKF DRVKRKSRLS RTTQTTASES EPTSVSVEEP  720
MFMGCRSSTD SVSTHSMSQT VNGPPNAIAP NIDESETVHL LANQGPPTSV PTEWMHPRFS  780
IFSKYNSVRD VLMEERAALL THCDVDAYHG RNNTQGLQLR VDVASPENEI DE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	563	581	KRRWTKRARAGDCFDRRRR
2	577	582	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-109	FAR1 family protein