PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027124257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 192aa MW: 22061.6 Da PI: 7.9766 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 149.5 | 3.2e-46 | 2 | 190 | 183 | 374 |
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++++e+l+ ++L+ p+Ea+aV + l l ++ +++ sl++ v+k++++++P vvvv+e ea+hns+ F rf+e+l +ysa+fd+le + r XP_027124257.1 2 VSDMEELKEDMLSKAPDEAVAVYSPLILRTMISKPESLRN----VIKVIRRMKPAVVVVTEVEANHNSPLFISRFTESLFFYSAFFDCLEDCMER 92 57899***************************99999999....*************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 ++e+r+++E +lg+ i+n+v eg++r r+ Wre +++ G+ +v+ls++ +qa+++l+k++ ++ + + +v+gWk+ p+ s++ XP_027124257.1 93 NNEHRKTIEGIYLGEGIRNMVGSEGDKRCTRNVMIDVWREFFTRYGMVEVELSHSSLQQANMILKKFHkASSCNLINTGKGIVIGWKGTPIHSLT 187 ********************************************************************88889999******************* PP GRAS 372 aWr 374 W+ XP_027124257.1 188 TWK 190 **8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MVSDMEELKE DMLSKAPDEA VAVYSPLILR TMISKPESLR NVIKVIRRMK PAVVVVTEVE 60 ANHNSPLFIS RFTESLFFYS AFFDCLEDCM ERNNEHRKTI EGIYLGEGIR NMVGSEGDKR 120 CTRNVMIDVW REFFTRYGMV EVELSHSSLQ QANMILKKFH KASSCNLINT GKGIVIGWKG 180 TPIHSLTTWK FM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 9e-34 | GRAS family protein |