PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027124248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 350aa MW: 39399.9 Da PI: 5.2329 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 88.1 | 1.4e-27 | 222 | 349 | 41 | 170 |
GRAS 41 laayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133 ++++f+eAL++r+ ++ ++ + + +++ + + ++ + +++ P+ ++++++a qa+ + v++++++H +D+ i G+QW L+qaL XP_027124248.1 222 IVFHFAEALQHRIDMQTGKITPERiiERFAYARNLELDFNLSFLACHQAIPFTQVTQFAAMQAVIDNVKSATKIHLVDLHIRSGVQWTVLMQALV 316 799***********97777664431255555555577777888889************************************************* PP GRAS 134 sRpegppslRiTgvgspesgskeeleetgerLakfAe 170 +R+ + p lRiT+vg +k+++eetg+rL +fA+ XP_027124248.1 317 ERD-DRPALRITAVGT---MNKQRMEETGKRLISFAQ 349 **5.669*********...67***************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence |
MEDYEADEQE ANGGKKQRQP PQPPDTDWFD VEDNSLYGLY QQQNNPTPSK VAFLEGGQQA 60 TSTPPQFNWV QNDFQHLVST PAVHSFQPIY DQATAKNNEQ PQQQRLPETG GKWQQLKGKT 120 HSFTLASLEL LSNYGKGFKN AAREDQNWSN DSPTNIDQDS SQGRRLSLGE IIRAAGARYI 180 QFSTKNVDGF SGLIHPYASA ITDISVAETA DVELVQECCP EIVFHFAEAL QHRIDMQTGK 240 ITPERIIERF AYARNLELDF NLSFLACHQA IPFTQVTQFA AMQAVIDNVK SATKIHLVDL 300 HIRSGVQWTV LMQALVERDD RPALRITAVG TMNKQRMEET GKRLISFAQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59450.1 | 9e-14 | GRAS family protein |