PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124197.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 432aa MW: 50529.5 Da PI: 7.0156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.4	1.2e-23	80	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++++leHnHel XP_027124197.1 80 QFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDIVLEHNHEL 167 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MEFNMEEDAY KFYNKYAFKM GFSVRKDYLN KDKDYLVYFM RLSLTNDIRS RSEVTDCSKL 60 AEDGTPELGM EFNSEEDAYQ FYNKYAFKMG FSVRKDYLNK DKDGVTTSRR YSCCKEGVKR 120 KYEGDVMPKR TRAPTKTGCG AKMVIVLFRG TMKYRVHDIV LEHNHELHIV QCAHMMPSQR 180 KVSEAQGFQA EISEDAGLSL KQSHELMEKE AGGMGNVGYT REDLKRYLRT RRERSLKYGE 240 AGSMLNYFQE QTLENPSFFH AVQLDCEEQI TNIFWADAGM LIDYKFFGDV VTFDTTYKTN 300 KEYRPLGVFV GFNQHRQIVI FGAALMYDET IDSFKWVFGT FLEAMCGKRP STILTDQDHA 360 MAAALSVVMP ETFHGLCTFH IRRNFMKHLG NHYKENSDLP YMFGACMYEF EEVEQFNRVW 420 ETMVKKHNLE NK

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MEFNMEEDAY KFYNKYAFKM GFSVRKDYLN KDKDYLVYFM RLSLTNDIRS RSEVTDCSKL  60
AEDGTPELGM EFNSEEDAYQ FYNKYAFKMG FSVRKDYLNK DKDGVTTSRR YSCCKEGVKR  120
KYEGDVMPKR TRAPTKTGCG AKMVIVLFRG TMKYRVHDIV LEHNHELHIV QCAHMMPSQR  180
KVSEAQGFQA EISEDAGLSL KQSHELMEKE AGGMGNVGYT REDLKRYLRT RRERSLKYGE  240
AGSMLNYFQE QTLENPSFFH AVQLDCEEQI TNIFWADAGM LIDYKFFGDV VTFDTTYKTN  300
KEYRPLGVFV GFNQHRQIVI FGAALMYDET IDSFKWVFGT FLEAMCGKRP STILTDQDHA  360
MAAALSVVMP ETFHGLCTFH IRRNFMKHLG NHYKENSDLP YMFGACMYEF EEVEQFNRVW  420
ETMVKKHNLE NK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-71	FAR1 family protein