PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124099.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 474aa MW: 52645 Da PI: 5.1829

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	9.9e-09	416	448	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL+++q+ +WF N+R ++ XP_027124099.1 416 PYPTEADKIALASSTGLDQKQINNWFINQRKRH 448 8*****************************885 PP
2	ELK	29.5	1.7e-10	368	389	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 E+K+ Ll KYsgy++sL++EF+ XP_027124099.1 368 EIKEKLLVKYSGYISSLRHEFC 389 89*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MASGLCHMLL FFGEFGMEVA ARALVRIKNG REWGSSRRGE KRREEAGEEG GRERRGGKEE 60 GGGGKKKEKA RGRKVEDGVI AVGGNVGAAA VFTFLLVCTL ELNTPTVHFL TPSLQLLLHF 120 DTDLSNPRSA YLQQFTDLLH HNLKAMEDMY GLPSSNTTST EGNPSTCQPP IAASLKEDDF 180 EAFGASWSSA LFDSSASPDA AGAITCNSIK RSSTTGTGSS SSQEESFSAM KASISSHPLY 240 TKLLEAYIDC QKVGAPPEIA MFLDEILQEN QLSINNTGTY CVNDDPELDE FMETYCDVLS 300 KYKLDLEKPY DEASKFLTNM ESQLSNLCNN TPRMLDEAAR SSNEDGSSGE VEVLQEKSFN 360 GPAEVNNEIK EKLLVKYSGY ISSLRHEFCT KKKKGKLPKD ARQILLNWWK VHCDWPYPTE 420 ADKIALASST GLDQKQINNW FINQRKRHWK PPENLQYPSL INNNEYGSFF LNVD

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MASGLCHMLL FFGEFGMEVA ARALVRIKNG REWGSSRRGE KRREEAGEEG GRERRGGKEE  60
GGGGKKKEKA RGRKVEDGVI AVGGNVGAAA VFTFLLVCTL ELNTPTVHFL TPSLQLLLHF  120
DTDLSNPRSA YLQQFTDLLH HNLKAMEDMY GLPSSNTTST EGNPSTCQPP IAASLKEDDF  180
EAFGASWSSA LFDSSASPDA AGAITCNSIK RSSTTGTGSS SSQEESFSAM KASISSHPLY  240
TKLLEAYIDC QKVGAPPEIA MFLDEILQEN QLSINNTGTY CVNDDPELDE FMETYCDVLS  300
KYKLDLEKPY DEASKFLTNM ESQLSNLCNN TPRMLDEAAR SSNEDGSSGE VEVLQEKSFN  360
GPAEVNNEIK EKLLVKYSGY ISSLRHEFCT KKKKGKLPKD ARQILLNWWK VHCDWPYPTE  420
ADKIALASST GLDQKQINNW FINQRKRHWK PPENLQYPSL INNNEYGSFF LNVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	64	GGKEEGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-82	TALE family protein