PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124035.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 455aa MW: 52633.9 Da PI: 8.2314

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.3	3e-19	88	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn +Ak GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++v+++ eHnH+la XP_027124035.1 88 EFYNLHAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVIRFIMEHNHPLA 178 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLNQEP ECDRDTFIEE SGGSIGGHED 60 EEADELVGAI GVDDVMKLTF DTEEEAGEFY NLHAKLSGFG IRKSNAKRDA DGISRFRKWV 120 CCCEGYRNEK WFNYEDRKRE AKPITRTGCG ACFRVKYDIE SVKYVVIRFI MEHNHPLASE 180 ASVQHIRSHR KVSDAEYAQA KSLKLVGARI CQIMKHFVIK AGGYSNVGFC IKDLYNRMDE 240 ERRKDIFNGD AEGALGFLAA KKDADDMFFY KYHVDNEGRL AMLFWADSKS RADFSVFGDV 300 LVFDTTYKTN KYRKPLVVLA GVNNHLNSTV FGCALLSDER IETYEWVLST FVEAMKGRKP 360 VAVMTDGDSA MRRAIKNLLP DACHRLCSWH LHRNARSNIR CEEFNNRFYN LMARKCSTLE 420 FEDRWARLVN ECGVVENEWV KKLYRRRRYE KYSKV

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLNQEP ECDRDTFIEE SGGSIGGHED  60
EEADELVGAI GVDDVMKLTF DTEEEAGEFY NLHAKLSGFG IRKSNAKRDA DGISRFRKWV  120
CCCEGYRNEK WFNYEDRKRE AKPITRTGCG ACFRVKYDIE SVKYVVIRFI MEHNHPLASE  180
ASVQHIRSHR KVSDAEYAQA KSLKLVGARI CQIMKHFVIK AGGYSNVGFC IKDLYNRMDE  240
ERRKDIFNGD AEGALGFLAA KKDADDMFFY KYHVDNEGRL AMLFWADSKS RADFSVFGDV  300
LVFDTTYKTN KYRKPLVVLA GVNNHLNSTV FGCALLSDER IETYEWVLST FVEAMKGRKP  360
VAVMTDGDSA MRRAIKNLLP DACHRLCSWH LHRNARSNIR CEEFNNRFYN LMARKCSTLE  420
FEDRWARLVN ECGVVENEWV KKLYRRRRYE KYSKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-62	FAR1 family protein