PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123737.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 412aa MW: 43540.8 Da PI: 7.9704

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.4	2.1e-41	75	252	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_027123737.1 75 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssy 169 789******************************************************************99987777777777555556667778 PP TCP 89 .......................................kaaksaakskksqksaasalnlakesrakarar....arertre 128 ++ +ak++ +++s++++l+l++ a a + ar+r ++ XP_027123737.1 170 fspnfsmpprrslfqgiglstdnspstttllnfqsgninPSSMLQAKQELRENSTHNTLDLSDAAAAAAAGEesplARKRRND 252 88888899999999999999999999999999999866433334446666666666666666644433333234555553322 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MEGGDDHHLH HHHHRPNFPF QLLEKKEDES ASCSSSGAAG FPSLAISSAD NTSQNPSRST 60 SSSLQISAEP SKKAPPKRTS TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET 120 IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS VPSQLRSSYF SPNFSMPPRR 180 SLFQGIGLST DNSPSTTTLL NFQSGNINPS SMLQAKQELR ENSTHNTLDL SDAAAAAAAG 240 EESPLARKRR NDQELQHHQQ QNIGNYLLQS STGAMPASHA SIPANFWMVQ ANSSNQVMGG 300 HDPIWTFPNV NNSAAAAAAL YRGSMSSGLH FMNFPTPVAL LPSQQLGTSS IGPTGGSGGG 360 GGNGGLAEAQ LGMLSGLNPY RSSGGGVSES PASGSHSQHH GDDRHDTTSH HS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MEGGDDHHLH HHHHRPNFPF QLLEKKEDES ASCSSSGAAG FPSLAISSAD NTSQNPSRST  60
SSSLQISAEP SKKAPPKRTS TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET  120
IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS VPSQLRSSYF SPNFSMPPRR  180
SLFQGIGLST DNSPSTTTLL NFQSGNINPS SMLQAKQELR ENSTHNTLDL SDAAAAAAAG  240
EESPLARKRR NDQELQHHQQ QNIGNYLLQS STGAMPASHA SIPANFWMVQ ANSSNQVMGG  300
HDPIWTFPNV NNSAAAAAAL YRGSMSSGLH FMNFPTPVAL LPSQQLGTSS IGPTGGSGGG  360
GGNGGLAEAQ LGMLSGLNPY RSSGGGVSES PASGSHSQHH GDDRHDTTSH HS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	2e-58	TCP family protein