PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123547.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 507aa MW: 56834.6 Da PI: 4.1319

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	272	319	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+e++ ++v ++ W+ a +++ Rt k+++s+++++ XP_027123547.1 272 KWSEEEEEIFTEVVFSHPASlgrnFWNHLAIEFP-SRTKKEIVSYYFNV 319 8**************9999999******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MVQKRPLSEE LYEALSKQPK LLEPSDKRVS VLEFPDGNIP PKLHILGEDG AACDKKKGER 60 DESLVDSNLA EFQSYVEKEI DRSLACSISN SSWATSTTCE EDVRSEAPCI LLSPDHYNLD 120 FPARTIFHTG DIYSSLLEYP PRKLVPIGSG FQAEIPEWCG CDDEKLSSSS GDAFEVFNRS 180 SQSLMSDIGN HLDHERQFSG SCLVPMPRSD MSEDTVEKLG DGRIDCSCDD VGSVRCVRQH 240 ITEAREKLRK TLGQEAFVKL GFLEVGEVVA EKWSEEEEEI FTEVVFSHPA SLGRNFWNHL 300 AIEFPSRTKK EIVSYYFNVF MLRRRAEQNR IDVLSIDSDN DEWEGTNVSA DEVIEKINGY 360 DDSLVESPAE EDDHNEIFED NLCEYKDDIN AEEASEDNIR LNLDGSKCVS KESDMCPIDM 420 PDNCSSDQAH QPLDQVLSDI SGNQNTKHIT SDLSSMSSST GNELFLEPCS SKEWDVGCLT 480 CPKDEDFLPT SSVIEEVFGA GAWNSRD

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MVQKRPLSEE LYEALSKQPK LLEPSDKRVS VLEFPDGNIP PKLHILGEDG AACDKKKGER  60
DESLVDSNLA EFQSYVEKEI DRSLACSISN SSWATSTTCE EDVRSEAPCI LLSPDHYNLD  120
FPARTIFHTG DIYSSLLEYP PRKLVPIGSG FQAEIPEWCG CDDEKLSSSS GDAFEVFNRS  180
SQSLMSDIGN HLDHERQFSG SCLVPMPRSD MSEDTVEKLG DGRIDCSCDD VGSVRCVRQH  240
ITEAREKLRK TLGQEAFVKL GFLEVGEVVA EKWSEEEEEI FTEVVFSHPA SLGRNFWNHL  300
AIEFPSRTKK EIVSYYFNVF MLRRRAEQNR IDVLSIDSDN DEWEGTNVSA DEVIEKINGY  360
DDSLVESPAE EDDHNEIFED NLCEYKDDIN AEEASEDNIR LNLDGSKCVS KESDMCPIDM  420
PDNCSSDQAH QPLDQVLSDI SGNQNTKHIT SDLSSMSSST GNELFLEPCS SKEWDVGCLT  480
CPKDEDFLPT SSVIEEVFGA GAWNSRD